Push button de novo assembly with the SPAdes Assembler 3.0!

We are excited to announce the release of the first 3rd party native application, the SPAdes Genome Assembler 3.0. This app was developed by the Algorithmic Biology Lab at the St. Petersburg Academic University of the Russian Academy of Sciences using the BaseSpace Native App Engine.

 

image

 

SPAdes is the first open source de novo assembly application available to the BaseSpace community and can be used to assemble small genomes. The output from the SPAdes app includes various assembly statistics at the contig and scaffold levels.

 

image

Sample B. Cereus data can be found and imported into your BaseSpace account from the following link

https://basespace.illumina.com/s/31oPTIRVFBXk

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out / Change )

Twitter picture

You are commenting using your Twitter account. Log Out / Change )

Facebook photo

You are commenting using your Facebook account. Log Out / Change )

Google+ photo

You are commenting using your Google+ account. Log Out / Change )

Connecting to %s

%d bloggers like this: