2 thoughts on “About”

  1. Are there any plans to create a “public health’ app for BaseSpace. One that would take fastq files and with only minimal hands on time, output snps and photogenic trees for infectious disease (not HIV, not cancer, not human genome)

    1. Hi Nick,

      We currently do not have any apps for infectious disease which output that information. That said, OneCodex (https://www.onecodex.com/) is a tool directly integrated with BaseSpace Sequence Hub. That tool outputs phylogenetic trees, but does not output SNP information.

      Do you have any recommendations for a pipeline to accomplish your needs?


Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google photo

You are commenting using your Google account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s