We just released an important update to BaseSpace IGV that adds several new features and bug fixes.
First, we updated to Broad IGV version 2.3 (from version 2.1). This update includes many new useful features from The Broad Institute, which you can read about here.
We also improved the BaseSpace data browser within IGV. You can now select BaseSpace data to load into IGV from a separate window, which keeps the primary IGV window clean for analyzing sequencing data. The new data browser will open every time you launch IGV from BaseSpace. You can also access the browser from the ‘BaseSpace ‘ menu in IGV.
Finally, we improved how BaseSpace IGV is launched and updated. After you launch IGV for the first time, we cache the downloaded files on your computer so that subsequent launches are very fast. When we release updates to IGV, these will be automatically downloaded on your next app launch. Also, if IGV is already open on your computer, launching from BaseSpace now adds the newly launched data into IGV.
We hope that these improvements will allow you to quickly and easily view your BaseSpace data in IGV.